File structure script

README.md

@@ -50,4 +50,4 @@ This repository contains all code files related to our ROSALI/Resiuals RCT simul
 
 **OR**  
 
-1. Run **autorun.sh** (by default, will take multiple weeks to run. Please modify to run in parrallel if necessary)  
+1. [BASH ONLY] Run **prepare_file_structure.sh** (only on first run) and **autorun.sh** (by default, will take multiple weeks to run. Please modify to run in parrallel if necessary)  

prepare_file_structure.sh

@@ -0,0 +1,61 @@
+echo "=================================================================================================="
+echo Preparing file structure. Please run at the root of the Simulation folder
+echo "=================================================================================================="
+
+mkdir Data
+mkdir Analysis
+
+cd Data
+mkdir DIF
+mkdir NoDIF
+cd -
+cd Data/DIF
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+cd -
+cd Data/NoDIF
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+cd -
+cd Analysis
+mkdir DIF
+mkdir NoDIF
+mkdir RESALI
+mkdir ROSALI-DIF
+cd -
+cd Analysis/DIF
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+cd -
+cd Analysis/NoDIF
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+cd -
+cd Analysis/ROSALI-DIF
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+mkdir log
+cd -
+cd Analysis/RESALI
+mkdir Detection
+mkdir Detection_data
+mkdir Results
+cd -
+cd Analysis/RESALI/Results
+mkdir N50
+mkdir N100
+mkdir N200
+mkdir N300
+cd -
+
+echo "DONE"