## Liste des scenarios

results <- c(sapply(1:4,function(x) paste0(x,c('A','B','C','D','E'))),sapply(5:9,function(x) paste0(x,c('A','B','C','D','E','F','G'))))

results2 <- c(sapply(10:20,function(x) paste0(x,c('A','B','C','D','E','F','G'))))

results <- c(sapply(c(50,100,200,300),function(x) paste0(results,'_',x)))

results2 <- c(sapply(c(50,100,200,300),function(x) paste0(results2,'_',x)))

results <- sort(results)

results2 <- sort(results2)

results <- c(results,results2)

## Importer l'analyse resali pour chaque scenario

for (r in results) {
  cat('--------------------------------------------------------------------------\n')
  cat(paste0(r,"\n"))
  cat('--------------------------------------------------------------------------\n')
  #### Importer les datas
  scen <- as.numeric(gsub("[A,B,C,D,E,F,G,_]","",substr(r,0,3)))
  if (substr(r,start=nchar(r)-1,stop=nchar(r))=="50") {
    N <- 50
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="100") {
    N <- 100
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="200") {
    N <- 200
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="300") {
    N <- 300
  }
  if (scen<5) {
    datt <- read.csv(paste0('/home/corentin/Documents/These/Recherche/Simulations/Data/NoDIF/N',N,'/scenario_',r,'.csv'))
  }
  if (scen>=5) {
    datt <- read.csv(paste0('/home/corentin/Documents/These/Recherche/Simulations/Data/DIF/N',N,'/scenario_',r,'.csv'))
  }
  #### Importer l'analyse
  analyse <- read.csv(paste0('/home/corentin/Documents/These/Recherche/Simulations/Analysis/RESALI/Detection/',r,".csv"))
  #### Pour chaque replication
  for (k in 1:1000) {
    if (k%%100==0) {
      cat(paste0("N = ",k," / 1000\n"))
    }
    datt[datt$replication==k,"dif.detect.1"] <- analyse[analyse$X==k,"dif.detect.1"]
    datt[datt$replication==k,"dif.detect.2"] <- analyse[analyse$X==k,"dif.detect.2"]
    datt[datt$replication==k,"dif.detect.3"] <- analyse[analyse$X==k,"dif.detect.3"]
    datt[datt$replication==k,"dif.detect.4"] <- analyse[analyse$X==k,"dif.detect.4"]
    datt[datt$replication==k,"dif.detect.unif.1"] <- analyse[analyse$X==k,"dif.detect.unif.1"]
    datt[datt$replication==k,"dif.detect.unif.2"] <- analyse[analyse$X==k,"dif.detect.unif.2"]
    datt[datt$replication==k,"dif.detect.unif.3"] <- analyse[analyse$X==k,"dif.detect.unif.3"]
    datt[datt$replication==k,"dif.detect.unif.4"] <- analyse[analyse$X==k,"dif.detect.unif.4"]
    if (scen==3 | scen==4 | scen>=13) {
      datt[datt$replication==k,"dif.detect.5"] <- analyse[analyse$X==k,"dif.detect.5"]
      datt[datt$replication==k,"dif.detect.6"] <- analyse[analyse$X==k,"dif.detect.6"]
      datt[datt$replication==k,"dif.detect.7"] <- analyse[analyse$X==k,"dif.detect.7"]
      datt[datt$replication==k,"dif.detect.unif.5"] <- analyse[analyse$X==k,"dif.detect.unif.5"]
      datt[datt$replication==k,"dif.detect.unif.6"] <- analyse[analyse$X==k,"dif.detect.unif.6"]
      datt[datt$replication==k,"dif.detect.unif.7"] <- analyse[analyse$X==k,"dif.detect.unif.7"]
    }
  }
  datt[is.na(datt$dif.detect.1),"dif.detect.1"] <- ""
  datt[is.na(datt$dif.detect.2),"dif.detect.2"] <- ""
  datt[is.na(datt$dif.detect.3),"dif.detect.3"] <- ""
  datt[is.na(datt$dif.detect.4),"dif.detect.4"] <- ""
  datt[is.na(datt$dif.detect.unif.1),"dif.detect.unif.1"] <- ""
  datt[is.na(datt$dif.detect.unif.2),"dif.detect.unif.2"] <- ""
  datt[is.na(datt$dif.detect.unif.3),"dif.detect.unif.3"] <- ""
  datt[is.na(datt$dif.detect.unif.4),"dif.detect.unif.4"] <- ""
  if (scen==3 | scen==4 | scen>=13) {
    datt[is.na(datt$dif.detect.5),"dif.detect.5"] <- ""
    datt[is.na(datt$dif.detect.6),"dif.detect.6"] <- ""
    datt[is.na(datt$dif.detect.7),"dif.detect.7"] <- ""
    datt[is.na(datt$dif.detect.unif.5),"dif.detect.unif.5"] <- ""
    datt[is.na(datt$dif.detect.unif.6),"dif.detect.unif.6"] <- ""
    datt[is.na(datt$dif.detect.unif.7),"dif.detect.unif.7"] <- ""
  }
  write.csv(datt,paste0("/home/corentin/Documents/These/Recherche/Simulations/Analysis/RESALI/Detection_data/",r,".csv"))
}









for (r in results) {
  cat('--------------------------------------------------------------------------\n')
  cat(paste0(r,"\n"))
  cat('--------------------------------------------------------------------------\n')
  #### Importer les datas
  scen <- as.numeric(gsub("[A,B,C,D,E,F,G,_]","",substr(r,0,3)))
  if (substr(r,start=nchar(r)-1,stop=nchar(r))=="50") {
    N <- 50
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="100") {
    N <- 100
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="200") {
    N <- 200
  }
  if (substr(r,start=nchar(r)-2,stop=nchar(r))=="300") {
    N <- 300
  }
  #### Importer l'analyse
  analyse <- read.csv(paste0("/home/corentin/Documents/These/Recherche/Simulations/Analysis/RESALI/Detection_data/",r,".csv"))
  analyse[is.na(analyse)] <- ""
  names(analyse)[names(analyse)=="dif.detect.1"] <- "dif_detect_1"
  names(analyse)[names(analyse)=="dif.detect.2"] <- "dif_detect_2"
  names(analyse)[names(analyse)=="dif.detect.3"] <- "dif_detect_3"
  names(analyse)[names(analyse)=="dif.detect.4"] <- "dif_detect_4"
  names(analyse)[names(analyse)=="dif.detect.unif.1"] <- "dif_detect_unif_1"
  names(analyse)[names(analyse)=="dif.detect.unif.2"] <- "dif_detect_unif_2"
  names(analyse)[names(analyse)=="dif.detect.unif.3"] <- "dif_detect_unif_3"
  names(analyse)[names(analyse)=="dif.detect.unif.4"] <- "dif_detect_unif_4"
  analyse[analyse$dif_detect_1==999,"dif_detect_1"] <- ""
  analyse[analyse$dif_detect_2==999,"dif_detect_2"] <- ""
  analyse[analyse$dif_detect_3==999,"dif_detect_3"] <- ""
  analyse[analyse$dif_detect_4==999,"dif_detect_4"] <- ""
  analyse[analyse$dif_detect_unif_1==999,"dif_detect_unif_1"] <- ""
  analyse[analyse$dif_detect_unif_2==999,"dif_detect_unif_2"] <- ""
  analyse[analyse$dif_detect_unif_3==999,"dif_detect_unif_3"] <- ""
  analyse[analyse$dif_detect_unif_4==999,"dif_detect_unif_4"] <- ""
  
  if (scen==3 | scen==4 | scen>=13) {
    names(analyse)[names(analyse)=="dif.detect.5"] <- "dif_detect_5"
    names(analyse)[names(analyse)=="dif.detect.6"] <- "dif_detect_6"
    names(analyse)[names(analyse)=="dif.detect.7"] <- "dif_detect_7"
    names(analyse)[names(analyse)=="dif.detect.unif.5"] <- "dif_detect_unif_5"
    names(analyse)[names(analyse)=="dif.detect.unif.6"] <- "dif_detect_unif_6"
    names(analyse)[names(analyse)=="dif.detect.unif.7"] <- "dif_detect_unif_7"
    analyse[analyse$dif_detect_5==999,"dif_detect_5"] <- ""
    analyse[analyse$dif_detect_6==999,"dif_detect_6"] <- ""
    analyse[analyse$dif_detect_7==999,"dif_detect_7"] <- ""
    analyse[analyse$dif_detect_unif_5==999,"dif_detect_unif_5"] <- ""
    analyse[analyse$dif_detect_unif_6==999,"dif_detect_unif_6"] <- ""
    analyse[analyse$dif_detect_unif_7==999,"dif_detect_unif_7"] <- ""
  }
  analyse <- analyse[,!names(analyse) %in% c("X","X.1","X.2")]
  write.csv(analyse,paste0("/home/corentin/Documents/These/Recherche/Simulations/Analysis/RESALI/Detection_data/",r,".csv"))
}
