echo "=================================================================================================="
echo Preparing file structure. Please run at the root of the Simulation folder
echo "=================================================================================================="

mkdir Data
mkdir Analysis

cd Data
mkdir DIF
mkdir NoDIF
cd -
cd Data/DIF
mkdir N50
mkdir N100
mkdir N200
mkdir N300
cd -
cd Data/NoDIF
mkdir N50
mkdir N100
mkdir N200
mkdir N300
cd -
cd Analysis
mkdir DIF
mkdir NoDIF
mkdir RESALI
mkdir ROSALI-DIF
cd -
cd Analysis/DIF
mkdir N50
mkdir N100
mkdir N200
mkdir N300
cd -
cd Analysis/NoDIF
mkdir N50
mkdir N100
mkdir N200
mkdir N300
cd -
cd Analysis/ROSALI-DIF
mkdir N50
mkdir N100
mkdir N200
mkdir N300
mkdir log
cd -
cd Analysis/RESALI
mkdir Detection
mkdir Detection_data
mkdir Results
cd -
cd Analysis/RESALI/Results
mkdir N50
mkdir N100
mkdir N200
mkdir N300
cd -

echo "DONE"